PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YTI0W
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 148aa    MW: 15447.9 Da    PI: 7.7276
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YTI0WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.17.8e-153054125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL+YP GA+sV+Ca+C++V
  Araip.YTI0W 30 CSGCRNLLMYPVGATSVCCAVCNAV 54
                 ************************9 PP

2zf-LSD146.85e-156993125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Araip.YTI0W 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                 ************************9 PP

3zf-LSD138.42.1e-12107131125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C +V
  Araip.YTI0W 107 CGNCRMLLMYQYGARSVKCAVCSFV 131
                  **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.5E-426128No hitNo description
TIGRFAMsTIGR010536.2E-142757IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-146695IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-11104133IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPPVPLAPYP TPSVPYTTPP SNGGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLICG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCSF VTSVGDSSTS TTEQKFST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201547.11e-103PREDICTED: protein LOL1
SwissprotQ93ZB19e-83LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PTX42e-89A0A0B0PTX4_G
TrEMBLA0A103XQX82e-89A0A103XQX8_CYNCS; Zinc finger, LSD1-type
STRINGVIT_02s0012g00990.t014e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-57lsd one like 1